Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100691886Four and a half LIM domains 5. (281 aa)    
Predicted Functional Partners:
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
  0.658
gal3st3
Galactose-3-O-sulfotransferase 3.
      
 0.627
dnal4
Dynein light chain 4, axonemal.
    
   0.578
SPRYD3
SPRY domain containing 3.
    
 
 0.523
LOC100693791
Four and a half LIM domains 1b.
    
  0.516
fhl1
Four and a half LIM domains 1a.
    
  0.516
LOC100695616
Vang-like protein.
    
 0.508
VANGL2
Vang-like protein.
    
 0.508
VANGL1
Vang-like protein.
    
 0.508
Cnot1
CCR4-NOT transcription complex, subunit 1.
    
   0.500
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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