Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
srsf7Uncharacterized protein. (254 aa)    
Predicted Functional Partners:
I3J8X5_ORENI
RRM domain-containing protein.
   
 0.998
LOC100707309
Serine and arginine rich splicing factor 9.
   
 0.998
SRSF3
Serine and arginine rich splicing factor 3b.
   
 0.998
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.988
ENSONIP00000006112
annotation not available
   
 0.987
I3JB75_ORENI
Uncharacterized protein.
   
 0.987
I3K607_ORENI
Serine and arginine rich splicing factor 1a.
   
 0.987
nxf1
Zgc:153681.
   
 0.981
LOC100689832
RRM domain-containing protein.
   
 0.980
tra2b
Transformer 2 beta homolog.
   
 0.980
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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