STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
I3IYP6_ORENIMyb-like domain-containing protein. (1531 aa)    
Predicted Functional Partners:
I3KTG4_ORENI
Cramped chromatin regulator homolog 1.
   
 
 0.833
ss18l2
SS18-like protein 2.
    
 
 0.767
smpd4
Sphingomyelin phosphodiesterase 4.
   
  
 0.640
LSM10
LSM10, U7 small nuclear RNA associated.
    
 0.563
fancm
Uncharacterized protein.
    
 0.553
asphd2
Aspartate beta-hydroxylase domain containing 2.
     
 0.529
LOC100700064
Asp_Arg_Hydrox domain-containing protein.
     
 0.529
LOC100703461
YY1 transcription factor.
   
 0.525
ENSONIP00000044249
annotation not available
      
 0.521
fanca
Fanconi_A_N domain-containing protein.
     
 0.518
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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