Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcgf1Polycomb group ring finger 1. (261 aa)    
Predicted Functional Partners:
RING1
RING-type domain-containing protein.
   
0.966
rnf2
Ring finger protein 2.
   
 0.966
Pcgf5
Polycomb group ring finger 5a.
    
 0.965
PCGF3
Polycomb group ring finger 3.
    
0.953
I3KQY8_ORENI
Si:ch211-195d17.2.
    
 0.948
cbx2
Chromobox homolog 2 (Drosophila Pc class).
    
 0.947
I3JQ01_ORENI
YY1 associated factor 2.
    
 0.924
LOC100701658
YY1 associated factor 2.
    
 0.924
Bmi1
Bmi1 polycomb ring finger oncogene 1a.
    
0.911
pcgf2
RING-type domain-containing protein.
    
0.911
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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