STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdm8Lysine (K)-specific demethylase 8. (419 aa)    
Predicted Functional Partners:
rps6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
    
   0.829
rccd1
RCC1 domain containing 1.
    
 
 0.789
I3KTJ2_ORENI
Rabaptin, RAB GTPase binding effector protein 2.
      
 0.590
jmjd6
Jumonji domain containing 6, arginine demethylase and lysine hydroxylase.
      
 0.589
jmjd4
Jumonji domain containing 4.
      
 0.583
epas1
Endothelial PAS domain protein 1b.
    
 0.563
hif1a
Hypoxia inducible factor 1 alpha variant X2.
    
 0.563
NPAS3
Neuronal PAS domain protein 3.
    
 0.563
ENSONIP00000043167
Neuronal PAS domain protein 1.
    
 0.563
LOC100708832
Hypoxia inducible factor 1 subunit alpha, like.
    
 0.563
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.