STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100534413Actin alpha 1, skeletal muscle. (377 aa)    
Predicted Functional Partners:
TPM1
Uncharacterized protein; Belongs to the tropomyosin family.
   
 0.974
LOC100703747
Uncharacterized protein; Belongs to the tropomyosin family.
   
 0.953
tpm4
Tropomyosin 4a; Belongs to the tropomyosin family.
   
 0.953
LOC100703626
Tropomyosin 4b; Belongs to the tropomyosin family.
   
 0.953
ENSONIP00000042807
Tropomyosin alpha-3 chain isoform X2.
   
 0.953
LOC100708395
Uncharacterized protein; Belongs to the tropomyosin family.
   
 0.953
I3JPV4_ORENI
Uncharacterized protein.
   
 0.924
LOC100694953
Troponin T type 2a (cardiac).
   
 0.924
I3KJ19_ORENI
Uncharacterized protein.
   
 0.924
ACTC1
Zgc:86709.
  
  
 
0.900
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.