STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dph6Diphthamine biosynthesis 6. (708 aa)    
Predicted Functional Partners:
Cnot1
CCR4-NOT transcription complex, subunit 1.
    
 
 0.680
cnot9
CCR4-NOT transcription complex subunit 9.
    
 
 0.638
cnot4
CCR4-NOT transcription complex, subunit 4a.
    
 
 0.638
I3JKS7_ORENI
PALP domain-containing protein.
  
 0.615
LOC100705145
Si:ch73-263o4.3.
  
 0.615
SDS
Serine dehydratase.
  
 0.615
LOC100705758
Serine dehydratase-like.
  
 0.615
ugcg
UDP-glucose ceramide glucosyltransferase.
  
 0.601
eef2
Eukaryotic translation elongation factor 2b.
   
 0.590
LOC100702471
Tr-type G domain-containing protein.
   
 0.590
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.