Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
dph6Diphthamine biosynthesis 6. (708 aa)    
Predicted Functional Partners:
eef2
Eukaryotic translation elongation factor 2b.
   
 0.639
LOC100702471
Tr-type G domain-containing protein.
   
 0.639
cnot9
CCR4-NOT transcription complex subunit 9.
    
 
 0.610
I3JKS7_ORENI
PALP domain-containing protein.
  
 0.605
LOC100705145
Si:ch73-263o4.3.
  
 0.605
SDS
Serine dehydratase.
  
 0.605
LOC100705758
Serine dehydratase-like.
  
 0.605
cnot4
CCR4-NOT transcription complex, subunit 4a.
    
 
 0.601
ugcg
UDP-glucose ceramide glucosyltransferase.
  
 0.572
ilvbl
IlvB (bacterial acetolactate synthase)-like; Belongs to the TPP enzyme family.
    
 0.568
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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