Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cdip1Cell death-inducing p53 target 1. (227 aa)    
Predicted Functional Partners:
LOC100711136
LITAF domain-containing protein.
    
 0.829
ENSONIP00000065516
annotation not available
    
 0.669
snrnp25
Small nuclear ribonucleoprotein 25.
      
 0.624
UBE2O
Ubiquitin conjugating enzyme E2 O.
    
 0.577
ENSONIP00000081478
LOW QUALITY PROTEIN: rab11 family-interacting protein 1.
      
 0.577
polr3k
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.568
Nprl3
NPR3-like, GATOR1 complex subunit.
      
 0.538
rhbdf1
Rhomboid 5 homolog 1a (Drosophila).
    
 
 0.523
carhsp1
Calcium regulated heat stable protein 1.
      
 0.522
I3IYX1_ORENI
Arylalkylamine N-acetyltransferase 2.
      
 0.511
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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