Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100695618Ependymin related 1. (212 aa)    
Predicted Functional Partners:
Trmt9b
tRNA methyltransferase 9B.
      
 0.722
sqstm1
Sequestosome 1.
    
 
 0.699
tmem106b
Transmembrane protein 106Ba.
      
 0.695
exosc3
Exosome component 3.
      
 0.695
cpd
Carboxypeptidase D, a.
      
 0.682
I3JR68_ORENI
NME/NM23 family member 8; Belongs to the NDK family.
    
 
 0.679
JDP2
Jun dimerization protein 2.
      
 0.672
LOC100708633
Carboxypeptidase A1 (pancreatic).
      
 0.672
LOC100695916
Elastase 2; Belongs to the peptidase S1 family.
      
 0.672
gpr141
Si:dkey-94e7.1.
      
 0.660
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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