STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lg11h8orf37Uncharacterized protein. (211 aa)    
Predicted Functional Partners:
aff4
AF4/FMR2 family, member 4.
      
 0.874
arl2bp
ADP-ribosylation factor-like 2 binding protein.
      
 0.766
ptger3
Prostaglandin E receptor 3 (subtype EP3).
      
 0.761
ofd1
OFD1 centriole and centriolar satellite protein.
      
 0.754
I3KAX8_ORENI
Ataxin 2.
      
 0.708
RAB28
RAB28, member RAS oncogene family.
      
 0.700
ttc8
Tetratricopeptide repeat domain 8.
      
 0.639
LOC100710475
Retinitis pigmentosa 1-like 1 protein.
      
 0.638
arl13b
ADP-ribosylation factor-like 13b.
      
 0.638
ENSONIP00000065553
Retinitis pigmentosa 1-like 1 protein.
      
 0.638
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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