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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snrnp48Small nuclear ribonucleoprotein 48 (U11/U12). (342 aa)    
Predicted Functional Partners:
Cwc22
MI domain-containing protein.
    
 0.954
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
    
 0.943
syf2
SYF2 pre-mRNA-splicing factor.
    
 0.934
Snrpf
Small nuclear ribonucleoprotein F.
    
 0.921
Snrpg
Small nuclear ribonucleoprotein G.
    
 0.906
snrpe
Small nuclear ribonucleoprotein E.
    
 0.906
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
 
 0.903
prpf8
Pre-mRNA processing factor 8.
   
 
 0.900
cwc25
CWC25 spliceosome associated protein homolog.
   
 0.899
snrpd2
Small nuclear ribonucleoprotein Sm D2.
    
 0.895
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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