STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100691621Carboxypeptidase X (M14 family), member 1b. (769 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
     
  0.542
dbt
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
      
 0.448
polr3h
Polymerase (RNA) III (DNA directed) polypeptide H.
    
 
 0.432
tpd52
Tumor protein D52.
     
 0.428
sys1
Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family.
      
 0.423
nudt15
Nucleotide triphosphate diphosphatase NUDT15.
      
 0.410
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.