STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100692760Protein DEK isoform X2. (515 aa)    
Predicted Functional Partners:
sf3b1
Splicing factor 3b, subunit 1.
   
 
 0.855
LOC100693655
Uncharacterized protein.
    
 
 0.848
UPF1
UPF1 RNA helicase and ATPase.
    
 
 0.848
Mybbp1a
MYB binding protein (P160) 1a.
     
 0.808
baz1b
Bromodomain adjacent to zinc finger domain, 1B.
    
 0.776
ddx21
DEAD (Asp-Glu-Ala-Asp) box helicase 21.
     
 0.743
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.742
ercc6
Excision repair cross-complementation group 6.
    
 0.727
srrm1
Serine/arginine repetitive matrix 1.
    
 
 0.695
hells
Helicase, lymphoid specific.
   
 0.653
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (26%) [HD]