STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100692760Protein DEK isoform X2. (515 aa)    
Predicted Functional Partners:
baz1b
Bromodomain adjacent to zinc finger domain, 1B.
   
 0.967
LOC100693655
Uncharacterized protein.
    
 
 0.917
UPF1
UPF1 RNA helicase and ATPase.
    
 
 0.917
Mybbp1a
MYB binding protein (P160) 1a.
    
 0.875
sf3b1
Splicing factor 3b, subunit 1.
   
 0.866
daxx
Death-domain associated protein.
    
 
 0.857
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.821
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 
 0.803
ddx21
DEAD (Asp-Glu-Ala-Asp) box helicase 21.
   
 0.799
gcat
Glycine C-acetyltransferase.
    
   0.762
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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