STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I3IZA8_ORENIRibonucleoprotein, PTB-binding 1. (770 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.701
mrpl4
Mitochondrial ribosomal protein L4.
   
 
 0.570
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.567
LOC100706673
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.567
eprs1
Glutamyl-prolyl-tRNA synthetase.
   
 
 0.556
rps6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 
 0.536
Aicda
Activation-induced cytidine deaminase.
    
 0.459
grsf1
G-rich RNA sequence binding factor 1.
   
 0.448
HNRNPH3
Heterogeneous nuclear ribonucleoprotein H3.
   
 0.448
hnrnph1
Heterogeneous nuclear ribonucleoprotein H1.
   
 0.448
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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