I3IZA8_ORENI protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I3IZA8_ORENI

Ribonucleoprotein, PTB-binding 1. (770 aa)

Predicted Functional Partners:

eprs1

0.694

prpf4b

0.621

hnrnpk

0.603

LOC100706673

0.603

I3IWZ7_ORENI

0.588

LOC100710677

0.588

LOC100695324

0.588

PTBP2

0.588

PTBP3

0.588

YBX2

0.585

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I3IWZ7_ORENI	I3IZA8_ORENI	ENSONIP00000001137	ENSONIP00000001949	Polypyrimidine tract binding protein 1a.	Ribonucleoprotein, PTB-binding 1.	0.588
I3IWZ7_ORENI	LOC100706673	ENSONIP00000001137	ENSONIP00000047018	Polypyrimidine tract binding protein 1a.	Heterogeneous nuclear ribonucleoprotein K, like.	0.795
I3IWZ7_ORENI	YBX2	ENSONIP00000001137	ENSONIP00000023865	Polypyrimidine tract binding protein 1a.	Y-box binding protein 2.	0.519
I3IWZ7_ORENI	hnrnpk	ENSONIP00000001137	ENSONIP00000018888	Polypyrimidine tract binding protein 1a.	Heterogeneous nuclear ribonucleoprotein K.	0.795
I3IZA8_ORENI	I3IWZ7_ORENI	ENSONIP00000001949	ENSONIP00000001137	Ribonucleoprotein, PTB-binding 1.	Polypyrimidine tract binding protein 1a.	0.588
I3IZA8_ORENI	LOC100695324	ENSONIP00000001949	ENSONIP00000053795	Ribonucleoprotein, PTB-binding 1.	Uncharacterized protein.	0.588
I3IZA8_ORENI	LOC100706673	ENSONIP00000001949	ENSONIP00000047018	Ribonucleoprotein, PTB-binding 1.	Heterogeneous nuclear ribonucleoprotein K, like.	0.603
I3IZA8_ORENI	LOC100710677	ENSONIP00000001949	ENSONIP00000009805	Ribonucleoprotein, PTB-binding 1.	Uncharacterized protein.	0.588
I3IZA8_ORENI	PTBP2	ENSONIP00000001949	ENSONIP00000062271	Ribonucleoprotein, PTB-binding 1.	Polypyrimidine tract binding protein 2a.	0.588
I3IZA8_ORENI	PTBP3	ENSONIP00000001949	ENSONIP00000072742	Ribonucleoprotein, PTB-binding 1.	Polypyrimidine tract binding protein 3.	0.588
I3IZA8_ORENI	YBX2	ENSONIP00000001949	ENSONIP00000023865	Ribonucleoprotein, PTB-binding 1.	Y-box binding protein 2.	0.585
I3IZA8_ORENI	eprs1	ENSONIP00000001949	ENSONIP00000078992	Ribonucleoprotein, PTB-binding 1.	Glutamyl-prolyl-tRNA synthetase.	0.694
I3IZA8_ORENI	hnrnpk	ENSONIP00000001949	ENSONIP00000018888	Ribonucleoprotein, PTB-binding 1.	Heterogeneous nuclear ribonucleoprotein K.	0.603
I3IZA8_ORENI	prpf4b	ENSONIP00000001949	ENSONIP00000048357	Ribonucleoprotein, PTB-binding 1.	Pre-mRNA processing factor 4Bb.	0.621
LOC100695324	I3IZA8_ORENI	ENSONIP00000053795	ENSONIP00000001949	Uncharacterized protein.	Ribonucleoprotein, PTB-binding 1.	0.588
LOC100695324	LOC100706673	ENSONIP00000053795	ENSONIP00000047018	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein K, like.	0.795
LOC100695324	YBX2	ENSONIP00000053795	ENSONIP00000023865	Uncharacterized protein.	Y-box binding protein 2.	0.519
LOC100695324	hnrnpk	ENSONIP00000053795	ENSONIP00000018888	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein K.	0.795
LOC100706673	I3IWZ7_ORENI	ENSONIP00000047018	ENSONIP00000001137	Heterogeneous nuclear ribonucleoprotein K, like.	Polypyrimidine tract binding protein 1a.	0.795
LOC100706673	I3IZA8_ORENI	ENSONIP00000047018	ENSONIP00000001949	Heterogeneous nuclear ribonucleoprotein K, like.	Ribonucleoprotein, PTB-binding 1.	0.603