Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cryzl1Crystallin, zeta (quinone reductase)-like 1. (420 aa)    
Predicted Functional Partners:
lg7h12orf4
Zgc:154077.
   
   0.919
xylb
Xylulokinase homolog (H. influenzae).
  
 
 0.907
gatd1
Glutamine amidotransferase like class 1 domain containing 1.
   
   0.904
urb1
URB1 ribosome biogenesis homolog.
      
 0.886
ppp1r21
Protein phosphatase 1, regulatory subunit 21.
    
   0.777
ZADH2
Zinc binding alcohol dehydrogenase domain containing 2.
  
   
 0.767
Cryl1
Crystallin, lambda 1.
  
 
 0.723
pgk1
Phosphoglycerate kinase.
   
  
 0.697
Mrpl1
Mitochondrial ribosomal protein L1.
      
 0.695
Tmem242
Transmembrane protein 242.
      
 0.690
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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