STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100693776Nipsnap homolog 3A (C. elegans). (249 aa)    
Predicted Functional Partners:
mthfsd
Methenyltetrahydrofolate synthetase domain containing.
   
    0.609
utp15
UTP15 small subunit processome component.
   
    0.493
wdr6
WD repeat domain 6.
   
    0.493
nop56
NOP56 ribonucleoprotein homolog.
   
    0.489
dbt
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
   
 
  0.489
lamtor1
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.
   
  0.484
LOC100692924
Structural maintenance of chromosomes protein.
   
    0.469
smc1a
Structural maintenance of chromosomes protein.
   
    0.469
LOC100711821
Anti-silencing function 1Ba histone chaperone.
   
    0.468
rpp38
Ribonuclease P/MRP 38 subunit.
   
    0.468
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.