Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
slc35f1Solute carrier family 35 member F1. (383 aa)    
Predicted Functional Partners:
RNF207
Ring finger protein 207.
      
 0.624
I3JDY2_ORENI
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
   
  
 0.608
retreg3
Reticulophagy regulator family member 3.
   
   0.589
pomk
Protein O-mannose kinase.
    
   0.582
SLC35D3
Solute carrier family 35 member D3.
   
  
 0.516
dhdds
Alkyl transferase; Belongs to the UPP synthase family.
  
 
 0.503
Ggps1
Geranylgeranyl diphosphate synthase 1; Belongs to the FPP/GGPP synthase family.
   
  0.489
fnta
Farnesyltransferase, CAAX box, alpha.
     
  0.487
LOC100693141
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
   0.471
slc35b4
Solute carrier family 35 member B4.
      
 0.464
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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