LOC100709473 protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC100709473

Zgc:109986. (300 aa)

Predicted Functional Partners:

TOMM7

0.932

tomm70

0.908

ENSONIP00000036944

0.886

tomm22

0.886

pink1

0.875

LOC100707887

0.785

immt

0.757

tomm6

0.757

vdac1

0.693

LOC100698339

0.693

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSONIP00000036944	LOC100698339	ENSONIP00000036944	ENSONIP00000039261	annotation not available	Voltage-dependent anion channel 3.	0.595
ENSONIP00000036944	LOC100707887	ENSONIP00000036944	ENSONIP00000075523	annotation not available	Mitochondrial import receptor subunit TOM5 homolog isoform X2.	0.901
ENSONIP00000036944	LOC100709473	ENSONIP00000036944	ENSONIP00000002161	annotation not available	Zgc:109986.	0.886
ENSONIP00000036944	TOMM7	ENSONIP00000036944	ENSONIP00000057063	annotation not available	Mitochondrial import receptor subunit TOM7 homolog.	0.975
ENSONIP00000036944	immt	ENSONIP00000036944	ENSONIP00000022027	annotation not available	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.869
ENSONIP00000036944	pink1	ENSONIP00000036944	ENSONIP00000020930	annotation not available	PTEN induced kinase 1.	0.790
ENSONIP00000036944	tomm6	ENSONIP00000036944	ENSONIP00000055938	annotation not available	Mitochondrial import receptor subunit TOM6 homolog.	0.880
ENSONIP00000036944	tomm70	ENSONIP00000036944	ENSONIP00000012185	annotation not available	Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae).	0.946
ENSONIP00000036944	vdac1	ENSONIP00000036944	ENSONIP00000029838	annotation not available	Voltage-dependent anion channel 1.	0.595
LOC100698339	ENSONIP00000036944	ENSONIP00000039261	ENSONIP00000036944	Voltage-dependent anion channel 3.	annotation not available	0.595
LOC100698339	LOC100709473	ENSONIP00000039261	ENSONIP00000002161	Voltage-dependent anion channel 3.	Zgc:109986.	0.693
LOC100698339	immt	ENSONIP00000039261	ENSONIP00000022027	Voltage-dependent anion channel 3.	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.770
LOC100698339	pink1	ENSONIP00000039261	ENSONIP00000020930	Voltage-dependent anion channel 3.	PTEN induced kinase 1.	0.664
LOC100698339	tomm22	ENSONIP00000039261	ENSONIP00000059064	Voltage-dependent anion channel 3.	Translocase of outer mitochondrial membrane 22 homolog (yeast).	0.609
LOC100698339	tomm70	ENSONIP00000039261	ENSONIP00000012185	Voltage-dependent anion channel 3.	Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae).	0.767
LOC100698339	vdac1	ENSONIP00000039261	ENSONIP00000029838	Voltage-dependent anion channel 3.	Voltage-dependent anion channel 1.	0.978
LOC100707887	ENSONIP00000036944	ENSONIP00000075523	ENSONIP00000036944	Mitochondrial import receptor subunit TOM5 homolog isoform X2.	annotation not available	0.901
LOC100707887	LOC100709473	ENSONIP00000075523	ENSONIP00000002161	Mitochondrial import receptor subunit TOM5 homolog isoform X2.	Zgc:109986.	0.785
LOC100707887	TOMM7	ENSONIP00000075523	ENSONIP00000057063	Mitochondrial import receptor subunit TOM5 homolog isoform X2.	Mitochondrial import receptor subunit TOM7 homolog.	0.999
LOC100707887	pink1	ENSONIP00000075523	ENSONIP00000020930	Mitochondrial import receptor subunit TOM5 homolog isoform X2.	PTEN induced kinase 1.	0.595