zfpl1 protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

zfpl1

Zinc finger protein-like 1. (327 aa)

Predicted Functional Partners:

tm9sf3

0.721

Fam91a1

0.699

vapb

0.692

vapa

0.692

imp4

0.665

acbd5

0.648

acbd4

0.648

ENSONIP00000030162

0.648

ENSONIP00000030964

0.648

tmf1

0.645

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSONIP00000030162	vapa	ENSONIP00000030162	ENSONIP00000023268	Acyl-CoA-binding domain-containing protein 5A isoform X1.	VAMP (vesicle-associated membrane protein)-associated protein A, like.	0.544
ENSONIP00000030162	vapb	ENSONIP00000030162	ENSONIP00000008677	Acyl-CoA-binding domain-containing protein 5A isoform X1.	VAMP (vesicle-associated membrane protein)-associated protein B and C.	0.558
ENSONIP00000030162	zfpl1	ENSONIP00000030162	ENSONIP00000002177	Acyl-CoA-binding domain-containing protein 5A isoform X1.	Zinc finger protein-like 1.	0.648
ENSONIP00000030964	vapa	ENSONIP00000030964	ENSONIP00000023268	annotation not available	VAMP (vesicle-associated membrane protein)-associated protein A, like.	0.544
ENSONIP00000030964	vapb	ENSONIP00000030964	ENSONIP00000008677	annotation not available	VAMP (vesicle-associated membrane protein)-associated protein B and C.	0.558
ENSONIP00000030964	zfpl1	ENSONIP00000030964	ENSONIP00000002177	annotation not available	Zinc finger protein-like 1.	0.648
Fam91a1	zfpl1	ENSONIP00000062602	ENSONIP00000002177	Family with sequence similarity 91 member A1.	Zinc finger protein-like 1.	0.699
acbd4	vapa	ENSONIP00000010143	ENSONIP00000023268	Acyl-CoA binding domain containing 4.	VAMP (vesicle-associated membrane protein)-associated protein A, like.	0.544
acbd4	vapb	ENSONIP00000010143	ENSONIP00000008677	Acyl-CoA binding domain containing 4.	VAMP (vesicle-associated membrane protein)-associated protein B and C.	0.558
acbd4	zfpl1	ENSONIP00000010143	ENSONIP00000002177	Acyl-CoA binding domain containing 4.	Zinc finger protein-like 1.	0.648
acbd5	vapa	ENSONIP00000008057	ENSONIP00000023268	Acyl-CoA-binding domain-containing protein 5; Binds medium- and long-chain acyl-CoA esters.	VAMP (vesicle-associated membrane protein)-associated protein A, like.	0.544
acbd5	vapb	ENSONIP00000008057	ENSONIP00000008677	Acyl-CoA-binding domain-containing protein 5; Binds medium- and long-chain acyl-CoA esters.	VAMP (vesicle-associated membrane protein)-associated protein B and C.	0.558
acbd5	zfpl1	ENSONIP00000008057	ENSONIP00000002177	Acyl-CoA-binding domain-containing protein 5; Binds medium- and long-chain acyl-CoA esters.	Zinc finger protein-like 1.	0.648
imp4	zfpl1	ENSONIP00000013089	ENSONIP00000002177	IMP U3 small nucleolar ribonucleoprotein 4.	Zinc finger protein-like 1.	0.665
tm9sf3	zfpl1	ENSONIP00000033552	ENSONIP00000002177	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	Zinc finger protein-like 1.	0.721
tmf1	zfpl1	ENSONIP00000055070	ENSONIP00000002177	TATA element modulatory factor 1.	Zinc finger protein-like 1.	0.645
vapa	ENSONIP00000030162	ENSONIP00000023268	ENSONIP00000030162	VAMP (vesicle-associated membrane protein)-associated protein A, like.	Acyl-CoA-binding domain-containing protein 5A isoform X1.	0.544
vapa	ENSONIP00000030964	ENSONIP00000023268	ENSONIP00000030964	VAMP (vesicle-associated membrane protein)-associated protein A, like.	annotation not available	0.544
vapa	acbd4	ENSONIP00000023268	ENSONIP00000010143	VAMP (vesicle-associated membrane protein)-associated protein A, like.	Acyl-CoA binding domain containing 4.	0.544
vapa	acbd5	ENSONIP00000023268	ENSONIP00000008057	VAMP (vesicle-associated membrane protein)-associated protein A, like.	Acyl-CoA-binding domain-containing protein 5; Binds medium- and long-chain acyl-CoA esters.	0.544