Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC100703904Retinal outer segment membrane protein 1a. (349 aa)    
Predicted Functional Partners:
LOC100708614
PNPLA domain-containing protein.
      
 0.913
LOC100690731
DUF3421 domain-containing protein.
      
 0.744
dusp6
Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.
      
 0.701
pou4f3
POU domain protein.
      
 0.675
LOC100707296
Patatin-like phospholipase domain containing 8.
      
 0.648
I3KJQ9_ORENI
PNPLA domain-containing protein.
      
 0.648
ENSONIP00000030156
annotation not available
    
 
 0.637
ENSONIP00000066937
annotation not available
    
 
 0.637
LOC109201447
E3 ubiquitin-protein ligase RNF128.
    
 
 0.637
grk7
G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.
   
 
 0.629
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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