Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100709620Procollagen C-endopeptidase enhancer a. (466 aa)    
Predicted Functional Partners:
Amn
Amnion associated transmembrane protein.
   
 0.725
tll1
Metalloendopeptidase.
   
 0.695
I3K0T5_ORENI
Metalloendopeptidase.
   
 0.695
COL22A1
Collagen type XXII alpha 1 chain.
    
 0.611
LOC100695027
Metalloendopeptidase.
   
 0.601
LOC100705440
Transcobalamin II.
    
 0.582
paqr5
Progestin and adipoQ receptor family member Va.
      
 0.525
vhl
Von Hippel-Lindau tumor suppressor.
      
 0.439
LOC100701740
Macrophage stimulating 1 receptor a.
    
  0.433
mst1r
Macrophage stimulating 1 receptor b.
    
  0.433
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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