Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
use1Unconventional SNARE in the ER 1 homolog (S. cerevisiae). (254 aa)    
Predicted Functional Partners:
LOC100697254
BCL2 interacting protein 1b.
   
 0.999
stx18
Syntaxin 18.
   
 0.999
nbas
Neuroblastoma amplified sequence.
    
 0.994
rint1
RAD50 interactor 1.
    
 0.994
zw10
Zw10 kinetochore protein.
    
 0.993
LOC100709063
BCL2 interacting protein 1a.
    
 0.993
LOC100705437
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.
    
 0.988
Stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.987
LOC100704478
SEC22 homolog B, vesicle trafficking protein a; Belongs to the synaptobrevin family.
    
 0.981
LOC100703038
Vesicle-trafficking protein SEC22b-B-like.
    
 0.981
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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