STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcp1aDecapping mRNA 1A. (515 aa)    
Predicted Functional Partners:
xrn1
5'-3' exoribonuclease 1.
    
 0.995
LOC100711565
MRNA-decapping enzyme 1B.
  
 
0.992
edc4
Enhancer of mRNA decapping 4.
    
 0.981
dcp2
M7GpppN-mRNA hydrolase isoform X1.
    
 0.981
patl2
PAT1 homolog 2.
    
 0.970
LOC100699738
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
   
 0.949
edc3
Uncharacterized protein.
   
 0.949
LOC100698984
DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.
   
 0.915
LOC100707815
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.915
ddx6
DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.
   
 0.915
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.