Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRSF6Serine and arginine rich splicing factor 6. (343 aa)    
Predicted Functional Partners:
nxf1
Zgc:153681.
   
 0.972
LOC100692146
SRSF protein kinase 1b.
    
 0.952
srpk1
SRSF protein kinase 1a.
    
 0.952
srsf7
Uncharacterized protein.
   
 0.877
alyref
Aly/REF export factor.
  
 0.864
LOC100709252
RRM domain-containing protein.
  
 0.859
LOC100707309
Serine and arginine rich splicing factor 9.
   
 0.854
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.830
slu7
SLU7 homolog, splicing factor.
    
 0.829
I3J8X5_ORENI
RRM domain-containing protein.
   
 0.827
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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