Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
stac3SH3 and cysteine rich domain 3. (333 aa)    
Predicted Functional Partners:
polr3b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.492
Polr1d
DNA-directed RNA polymerases I and III subunit RPAC2 isoform X2.
    
 
 0.470
LOC100693655
Uncharacterized protein.
    
 
 0.465
UPF1
UPF1 RNA helicase and ATPase.
    
 
 0.465
myod1
Myogenic factor.
      
 0.454
LOC100699569
Calpain 3b; Belongs to the peptidase C2 family.
   
  
 0.417
pmpcb
Peptidase (mitochondrial processing) beta; Belongs to the peptidase M16 family.
   
   0.417
LOC100705312
Ubiquinol-cytochrome c reductase core protein 1.
   
   0.417
LOC100695608
Ubiquinol-cytochrome c reductase core protein 2a.
    
   0.406
LOC100709124
Uncharacterized protein.
    
   0.406
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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