Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sac3d1Si:zfos-452g4.1. (339 aa)    
Predicted Functional Partners:
tmem160
Transmembrane protein 160.
      
 0.896
pcid2
PCI domain containing 2.
   
 
 0.873
Sem1
26S proteasome complex subunit SEM1.
    
 
 0.864
nxf1
Zgc:153681.
    
 
 0.861
Vps26a
VPS26, retromer complex component A.
    
   0.852
rae1
Ribonucleic acid export 1.
    
 
 0.795
eny2
Enhancer of yellow 2 transcription factor.
    
 
 0.772
LOC100694417
Transcription and mRNA export factor ENY2-2.
    
 
 0.772
pkmyt1
Protein kinase, membrane associated tyrosine/threonine 1.
   
  
 0.702
gle1
GLE1 RNA export mediator.
   
 
 0.691
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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