Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
slc25a19Solute carrier family 25 member 19; Belongs to the mitochondrial carrier (TC 2.A.29) family. (328 aa)    
Predicted Functional Partners:
smndc1
Survival motor neuron domain containing 1.
   
  
 0.896
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.768
rpl27
60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.
   
 
 0.767
tpk1
Thiamine pyrophosphokinase; Belongs to the thiamine pyrophosphokinase family.
      
 0.764
rpl14
Ribosomal protein L14.
   
 
 0.748
ENSONIP00000059020
annotation not available
   
 
 0.748
timm10b
Translocase of inner mitochondrial membrane 10 homolog B (yeast).
      
 0.742
rps18
Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.
   
 
 0.733
rpl4
Ribosomal protein L4.
   
 
 0.722
msto1
Misato mitochondrial distribution and morphology regulator 1.
   
  
 0.720
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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