STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100692367Parvalbumin 8; Belongs to the parvalbumin family. (109 aa)    
Predicted Functional Partners:
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.709
LOC100693503
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
    
 0.709
wdr90
WD repeat domain 90.
   
 0.569
LOC100702647
Si:dkey-71b5.7.
   
 0.557
xpc
Xeroderma pigmentosum, complementation group C.
    
 0.510
slc26a5
Solute carrier family 26 member 5.
    
 
 0.508
LOC100704088
Doublecortin-like kinase 1b.
   
 0.481
LOC100704838
Doublecortin-like kinase 1a.
   
 0.481
I3JR68_ORENI
NME/NM23 family member 8; Belongs to the NDK family.
   
 
 0.443
LOC100692950
Peptidylprolyl isomerase.
   
 0.435
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.