Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rereArginine-glutamic acid dipeptide (RE) repeats a. (1546 aa)    
Predicted Functional Partners:
rbbp5
Retinoblastoma binding protein 5.
    
 
 0.797
NR2E3
Nuclear receptor subfamily 2 group E member 3.
    
 0.715
nr2e1
Nuclear receptor subfamily 2, group E, member 1.
    
 0.715
LOC100705476
Nuclear receptor subfamily 2, group E, member 3.
    
 0.715
fat2
FAT atypical cadherin 2.
    
 0.704
fat1
FAT atypical cadherin 1a.
    
 0.695
LOC100707106
Recombination signal binding protein for immunoglobulin kappa J region-like.
    
  0.600
LOC106098755
Recombination signal binding protein for immunoglobulin kappa J region a.
    
  0.600
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
  0.600
wdr5
WD repeat domain 5.
    
   0.596
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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