RNF126 protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RNF126

Ring finger protein 126. (330 aa)

Predicted Functional Partners:

LOC100694839

0.737

bag6

0.737

ENSONIP00000058229

0.737

uba52

0.708

polrmt

0.678

rps27a

0.666

get4

0.654

rspo2

0.631

ENSONIP00000047919

0.595

Rspo3

0.582

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSONIP00000047919	ENSONIP00000058229	ENSONIP00000047919	ENSONIP00000058229	Ubiquitin B.	Large proline-rich protein BAG6 isoform X1.	0.423
ENSONIP00000047919	LOC100694839	ENSONIP00000047919	ENSONIP00000020093	Ubiquitin B.	BCL2 associated athanogene 6, like.	0.423
ENSONIP00000047919	RNF126	ENSONIP00000047919	ENSONIP00000003025	Ubiquitin B.	Ring finger protein 126.	0.595
ENSONIP00000047919	Rspo3	ENSONIP00000047919	ENSONIP00000009097	Ubiquitin B.	R-spondin 3.	0.601
ENSONIP00000047919	bag6	ENSONIP00000047919	ENSONIP00000030961	Ubiquitin B.	BCL2 associated athanogene 6.	0.423
ENSONIP00000047919	get4	ENSONIP00000047919	ENSONIP00000064343	Ubiquitin B.	Guided entry of tail-anchored proteins factor 4.	0.549
ENSONIP00000047919	rps27a	ENSONIP00000047919	ENSONIP00000020250	Ubiquitin B.	Ribosomal protein S27a.	0.994
ENSONIP00000047919	uba52	ENSONIP00000047919	ENSONIP00000016035	Ubiquitin B.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.997
ENSONIP00000058229	ENSONIP00000047919	ENSONIP00000058229	ENSONIP00000047919	Large proline-rich protein BAG6 isoform X1.	Ubiquitin B.	0.423
ENSONIP00000058229	LOC100694839	ENSONIP00000058229	ENSONIP00000020093	Large proline-rich protein BAG6 isoform X1.	BCL2 associated athanogene 6, like.	0.898
ENSONIP00000058229	RNF126	ENSONIP00000058229	ENSONIP00000003025	Large proline-rich protein BAG6 isoform X1.	Ring finger protein 126.	0.737
ENSONIP00000058229	get4	ENSONIP00000058229	ENSONIP00000064343	Large proline-rich protein BAG6 isoform X1.	Guided entry of tail-anchored proteins factor 4.	0.937
LOC100694839	ENSONIP00000047919	ENSONIP00000020093	ENSONIP00000047919	BCL2 associated athanogene 6, like.	Ubiquitin B.	0.423
LOC100694839	ENSONIP00000058229	ENSONIP00000020093	ENSONIP00000058229	BCL2 associated athanogene 6, like.	Large proline-rich protein BAG6 isoform X1.	0.898
LOC100694839	RNF126	ENSONIP00000020093	ENSONIP00000003025	BCL2 associated athanogene 6, like.	Ring finger protein 126.	0.737
LOC100694839	get4	ENSONIP00000020093	ENSONIP00000064343	BCL2 associated athanogene 6, like.	Guided entry of tail-anchored proteins factor 4.	0.937
RNF126	ENSONIP00000047919	ENSONIP00000003025	ENSONIP00000047919	Ring finger protein 126.	Ubiquitin B.	0.595
RNF126	ENSONIP00000058229	ENSONIP00000003025	ENSONIP00000058229	Ring finger protein 126.	Large proline-rich protein BAG6 isoform X1.	0.737
RNF126	LOC100694839	ENSONIP00000003025	ENSONIP00000020093	Ring finger protein 126.	BCL2 associated athanogene 6, like.	0.737
RNF126	Rspo3	ENSONIP00000003025	ENSONIP00000009097	Ring finger protein 126.	R-spondin 3.	0.582