Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102079138Uncharacterized protein. (581 aa)    
Predicted Functional Partners:
tcp1
T-complex 1.
    
  0.965
cct5
Chaperonin containing TCP1, subunit 5 (epsilon).
    
  0.965
cct3
T-complex protein 1 subunit gamma.
    
  0.965
fgfr1op2
FGFR1 oncogene partner 2.
    
 
 0.925
LOC100701317
MOB family member 4, phocein.
    
 
 0.919
LOC100697497
Programmed cell death 10a.
    
 
 0.917
LOC100709687
Programmed cell death 10b.
    
 
 0.917
ppp2r1b
Protein phosphatase 2, regulatory subunit A, beta b.
    
 
 0.907
cct8
Chaperonin containing TCP1, subunit 8 (theta).
    
   0.904
strip1
Striatin interacting protein 1.
    
 
 0.789
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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