Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
slc16a4Solute carrier family 16 member 4. (573 aa)    
Predicted Functional Partners:
LOC100692670
Ras-related GTP binding D.
     
 0.815
slc38a9
Solute carrier family 38 member 9.
   
 
 0.811
lamtor3
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.
    
  0.809
LOC100704732
Ras-related GTP binding A.
     
  0.808
lamtor1
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.
     
  0.808
veph1
Ventricular zone expressed PH domain-containing 1.
      
 0.695
ccdc117
Si:ch211-102c2.7.
      
 0.693
tmem68
Transmembrane protein 68.
      
 0.677
emb
Embigin.
   
 0.655
I3K1L6_ORENI
Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase.
      
 0.620
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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