STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mterf3Mitochondrial transcription termination factor 3. (428 aa)    
Predicted Functional Partners:
fastkd2
FAST kinase domains 2.
   
 0.974
trub2
TruB pseudouridine (psi) synthase family member 2.
   
 0.904
ddx28
DEAD (Asp-Glu-Ala-Asp) box polypeptide 28.
    
 
 0.886
rcc1l
RCC1 like.
    
  0.878
LOC100709233
RNA pseudouridine synthase D4.
   
 0.759
polrmt
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.
     
 0.690
ss18l1
Mitochondrial ribosome-associated GTPase 2.
   
 
 0.685
Mrm1
Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae).
    
 
 0.682
LOC100691767
Mitochondrial transcription termination factor 4.
      
 0.677
I3KY89_ORENI
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
    
 
 0.668
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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