Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100697755Si:ch211-129c21.1; Belongs to the semaphorin family. (782 aa)    
Predicted Functional Partners:
ptprc
Protein tyrosine phosphatase receptor type C.
    
 0.767
I3JQC3_ORENI
Sema domain-containing protein.
    
 0.676
I3JQ94_ORENI
Plexin b2b.
    
 0.676
I3KNB3_ORENI
Sema domain-containing protein.
    
 0.676
LOC100703115
Plexin B3.
    
 0.661
LOC100711384
Plexin b1b.
    
 0.661
LOC100693707
Plexin b1a.
    
 0.661
LOC100694084
Homer scaffold protein 1b.
     
  0.630
rras2
RAS related 2.
     
 0.621
LOC100699786
RAS related.
     
 0.621
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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