Ubl7 protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Ubl7

Ubiquitin-like 7b (bone marrow stromal cell-derived). (393 aa)

Predicted Functional Partners:

ube4b

0.976

ercc1

0.944

trip12

0.890

uba52

0.847

ubxn7

0.847

ube4a

0.842

ENSONIP00000047919

0.842

I3J608_ORENI

0.804

nbr1

0.804

ciapin1

0.796

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSONIP00000047919	I3J608_ORENI	ENSONIP00000047919	ENSONIP00000004298	Ubiquitin B.	NBR1 autophagy cargo receptor b.	0.981
ENSONIP00000047919	Ubl7	ENSONIP00000047919	ENSONIP00000003361	Ubiquitin B.	Ubiquitin-like 7b (bone marrow stromal cell-derived).	0.842
ENSONIP00000047919	ercc1	ENSONIP00000047919	ENSONIP00000005206	Ubiquitin B.	Excision repair cross-complementation group 1.	0.650
ENSONIP00000047919	nbr1	ENSONIP00000047919	ENSONIP00000052342	Ubiquitin B.	NBR1 autophagy cargo receptor a.	0.981
ENSONIP00000047919	trip12	ENSONIP00000047919	ENSONIP00000007095	Ubiquitin B.	Thyroid hormone receptor interactor 12.	0.940
ENSONIP00000047919	uba52	ENSONIP00000047919	ENSONIP00000016035	Ubiquitin B.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
ENSONIP00000047919	ube4a	ENSONIP00000047919	ENSONIP00000035679	Ubiquitin B.	Ubiquitination factor E4A (UFD2 homolog, yeast).	0.847
ENSONIP00000047919	ube4b	ENSONIP00000047919	ENSONIP00000002954	Ubiquitin B.	Ubiquitination factor E4B, UFD2 homolog (S. cerevisiae).	0.847
ENSONIP00000047919	ubxn7	ENSONIP00000047919	ENSONIP00000046189	Ubiquitin B.	UBX domain protein 7.	0.906
I3J608_ORENI	ENSONIP00000047919	ENSONIP00000004298	ENSONIP00000047919	NBR1 autophagy cargo receptor b.	Ubiquitin B.	0.981
I3J608_ORENI	Ubl7	ENSONIP00000004298	ENSONIP00000003361	NBR1 autophagy cargo receptor b.	Ubiquitin-like 7b (bone marrow stromal cell-derived).	0.804
I3J608_ORENI	nbr1	ENSONIP00000004298	ENSONIP00000052342	NBR1 autophagy cargo receptor b.	NBR1 autophagy cargo receptor a.	0.983
I3J608_ORENI	uba52	ENSONIP00000004298	ENSONIP00000016035	NBR1 autophagy cargo receptor b.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.982
Ubl7	ENSONIP00000047919	ENSONIP00000003361	ENSONIP00000047919	Ubiquitin-like 7b (bone marrow stromal cell-derived).	Ubiquitin B.	0.842
Ubl7	I3J608_ORENI	ENSONIP00000003361	ENSONIP00000004298	Ubiquitin-like 7b (bone marrow stromal cell-derived).	NBR1 autophagy cargo receptor b.	0.804
Ubl7	ciapin1	ENSONIP00000003361	ENSONIP00000069281	Ubiquitin-like 7b (bone marrow stromal cell-derived).	Anamorsin; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis, facilitating the de novo assembly of a [4Fe-4S] cluster on the scaffold complex NUBP1-NUBP2. Electrons are transferred to CIAPIN1 from NADPH via the FAD- and FMN-containing protein NDOR1. NDOR1-CIAPIN1 are also required for the assembly of the diferric tyrosyl radical cofactor of ribonucleotide reductase (RNR), probably by providing electron [...]	0.796
Ubl7	ercc1	ENSONIP00000003361	ENSONIP00000005206	Ubiquitin-like 7b (bone marrow stromal cell-derived).	Excision repair cross-complementation group 1.	0.944
Ubl7	nbr1	ENSONIP00000003361	ENSONIP00000052342	Ubiquitin-like 7b (bone marrow stromal cell-derived).	NBR1 autophagy cargo receptor a.	0.804
Ubl7	trip12	ENSONIP00000003361	ENSONIP00000007095	Ubiquitin-like 7b (bone marrow stromal cell-derived).	Thyroid hormone receptor interactor 12.	0.890
Ubl7	uba52	ENSONIP00000003361	ENSONIP00000016035	Ubiquitin-like 7b (bone marrow stromal cell-derived).	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.847