Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cep19Centrosomal protein 19. (158 aa)    
Predicted Functional Partners:
LOC100694868
FGFR1 oncogene partner.
    
 
 0.976
LOC100700981
RAB, member of RAS oncogene family-like 2.
   
 
 0.964
cep350
Centrosomal protein 350.
    
 
 0.925
cep83
Centrosomal protein 83.
      
 0.908
sclt1
Sodium channel and clathrin linker 1.
      
 0.814
cep164
WW domain-containing protein.
      
 0.778
Ppp2r3c
Protein phosphatase 2, regulatory subunit B'', gamma.
    
   0.762
fbf1
Uncharacterized protein.
      
 0.702
cep89
Centrosomal protein 89.
      
 0.700
I3KF91_ORENI
Intraflagellar transport 88 homolog.
      
 0.699
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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