STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tent4bTerminal nucleotidyltransferase 4B. (672 aa)    
Predicted Functional Partners:
tent4a
Terminal nucleotidyltransferase 4A.
  
  
 
0.902
mtrex
Mtr4 exosome RNA helicase.
   
 
 0.749
zcchc7
Zinc finger, CCHC domain containing 7.
   
 
 0.744
exosc10
Exosome component 10.
   
 
 0.726
cnot9
CCR4-NOT transcription complex subunit 9.
    
   0.688
LOC102079931
Zinc finger CCHC domain-containing protein 7.
   
 
 0.688
scaf4
SR-related CTD-associated factor 4a.
    
 
 0.680
Zcchc14
Zinc finger, CCHC domain containing 14.
   
 
 0.679
skiv2l
SKI2 homolog, superkiller viralicidic activity 2-like.
   
 
 0.599
Tut1
Terminal uridylyl transferase 1, U6 snRNA-specific.
      
 0.570
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.