LOC100691047 protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100691047

WT1 interacting protein. (711 aa)

Predicted Functional Partners:

haus8

0.764

haus1

0.761

Haus3

0.750

haus5

0.711

I3JML8_ORENI

0.711

vhl

0.661

haus7

0.635

ENSONIP00000041799

0.618

cul2

0.605

lats1

0.604

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSONIP00000041799	Haus3	ENSONIP00000041799	ENSONIP00000016243	annotation not available	HAUS augmin-like complex, subunit 3.	0.974
ENSONIP00000041799	I3JML8_ORENI	ENSONIP00000041799	ENSONIP00000010112	annotation not available	RNA binding motif protein 42.	0.900
ENSONIP00000041799	LOC100691047	ENSONIP00000041799	ENSONIP00000003594	annotation not available	WT1 interacting protein.	0.618
ENSONIP00000041799	haus1	ENSONIP00000041799	ENSONIP00000005889	annotation not available	HAUS augmin-like complex, subunit 1.	0.978
ENSONIP00000041799	haus5	ENSONIP00000041799	ENSONIP00000002367	annotation not available	HAUS augmin-like complex, subunit 5.	0.978
ENSONIP00000041799	haus7	ENSONIP00000041799	ENSONIP00000008208	annotation not available	Uncharacterized protein.	0.977
ENSONIP00000041799	haus8	ENSONIP00000041799	ENSONIP00000002732	annotation not available	Uncharacterized protein.	0.969
Haus3	ENSONIP00000041799	ENSONIP00000016243	ENSONIP00000041799	HAUS augmin-like complex, subunit 3.	annotation not available	0.974
Haus3	I3JML8_ORENI	ENSONIP00000016243	ENSONIP00000010112	HAUS augmin-like complex, subunit 3.	RNA binding motif protein 42.	0.959
Haus3	LOC100691047	ENSONIP00000016243	ENSONIP00000003594	HAUS augmin-like complex, subunit 3.	WT1 interacting protein.	0.750
Haus3	haus1	ENSONIP00000016243	ENSONIP00000005889	HAUS augmin-like complex, subunit 3.	HAUS augmin-like complex, subunit 1.	0.995
Haus3	haus5	ENSONIP00000016243	ENSONIP00000002367	HAUS augmin-like complex, subunit 3.	HAUS augmin-like complex, subunit 5.	0.989
Haus3	haus7	ENSONIP00000016243	ENSONIP00000008208	HAUS augmin-like complex, subunit 3.	Uncharacterized protein.	0.974
Haus3	haus8	ENSONIP00000016243	ENSONIP00000002732	HAUS augmin-like complex, subunit 3.	Uncharacterized protein.	0.976
I3JML8_ORENI	ENSONIP00000041799	ENSONIP00000010112	ENSONIP00000041799	RNA binding motif protein 42.	annotation not available	0.900
I3JML8_ORENI	Haus3	ENSONIP00000010112	ENSONIP00000016243	RNA binding motif protein 42.	HAUS augmin-like complex, subunit 3.	0.959
I3JML8_ORENI	LOC100691047	ENSONIP00000010112	ENSONIP00000003594	RNA binding motif protein 42.	WT1 interacting protein.	0.711
I3JML8_ORENI	haus1	ENSONIP00000010112	ENSONIP00000005889	RNA binding motif protein 42.	HAUS augmin-like complex, subunit 1.	0.948
I3JML8_ORENI	haus7	ENSONIP00000010112	ENSONIP00000008208	RNA binding motif protein 42.	Uncharacterized protein.	0.915
I3JML8_ORENI	haus8	ENSONIP00000010112	ENSONIP00000002732	RNA binding motif protein 42.	Uncharacterized protein.	0.952