rabggta protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rabggta

Rab geranylgeranyltransferase subunit alpha. (583 aa)

Predicted Functional Partners:

rabggtb

0.999

LOC100690604

0.982

rab24

0.806

rab31

0.784

rab22a

0.784

rabl6

0.760

LOC100695098

0.726

ENSONIP00000073858

0.726

LOC100707666

0.726

ykt6

0.722

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSONIP00000073858	LOC100690604	ENSONIP00000073858	ENSONIP00000022480	Ras-related protein ORAB-1.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.709
ENSONIP00000073858	LOC100707666	ENSONIP00000073858	ENSONIP00000075373	Ras-related protein ORAB-1.	Uncharacterized protein.	0.900
ENSONIP00000073858	rabggta	ENSONIP00000073858	ENSONIP00000003622	Ras-related protein ORAB-1.	Rab geranylgeranyltransferase subunit alpha.	0.726
ENSONIP00000073858	rabggtb	ENSONIP00000073858	ENSONIP00000023115	Ras-related protein ORAB-1.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.819
ENSONIP00000073858	ykt6	ENSONIP00000073858	ENSONIP00000017986	Ras-related protein ORAB-1.	YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.	0.704
LOC100690604	ENSONIP00000073858	ENSONIP00000022480	ENSONIP00000073858	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Ras-related protein ORAB-1.	0.709
LOC100690604	LOC100695098	ENSONIP00000022480	ENSONIP00000072355	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	ZRAB1B, member RAS oncogene family a.	0.709
LOC100690604	LOC100707666	ENSONIP00000022480	ENSONIP00000075373	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Uncharacterized protein.	0.709
LOC100690604	rab22a	ENSONIP00000022480	ENSONIP00000051621	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	RAB22A, member RAS oncogene family.	0.727
LOC100690604	rab24	ENSONIP00000022480	ENSONIP00000060708	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	RAB24, member RAS oncogene family.	0.644
LOC100690604	rab31	ENSONIP00000022480	ENSONIP00000028006	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	RAB31, member RAS oncogene family.	0.727
LOC100690604	rabggta	ENSONIP00000022480	ENSONIP00000003622	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Rab geranylgeranyltransferase subunit alpha.	0.982
LOC100690604	rabggtb	ENSONIP00000022480	ENSONIP00000023115	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.965
LOC100690604	rabl6	ENSONIP00000022480	ENSONIP00000013080	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	RAB, member RAS oncogene family-like 6b.	0.559
LOC100695098	LOC100690604	ENSONIP00000072355	ENSONIP00000022480	ZRAB1B, member RAS oncogene family a.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.709
LOC100695098	rabggta	ENSONIP00000072355	ENSONIP00000003622	ZRAB1B, member RAS oncogene family a.	Rab geranylgeranyltransferase subunit alpha.	0.726
LOC100695098	rabggtb	ENSONIP00000072355	ENSONIP00000023115	ZRAB1B, member RAS oncogene family a.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.819
LOC100695098	ykt6	ENSONIP00000072355	ENSONIP00000017986	ZRAB1B, member RAS oncogene family a.	YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.	0.704
LOC100707666	ENSONIP00000073858	ENSONIP00000075373	ENSONIP00000073858	Uncharacterized protein.	Ras-related protein ORAB-1.	0.900
LOC100707666	LOC100690604	ENSONIP00000075373	ENSONIP00000022480	Uncharacterized protein.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.709