STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdac9Histone deacetylase 9b. (623 aa)    
Predicted Functional Partners:
I3JV04_ORENI
Translocase of outer mitochondrial membrane 20.
    
 0.861
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.861
ENSONIP00000079948
Uncharacterized protein LOC109194435 isoform X1.
    
 0.796
sin3a
SIN3 transcription regulator family member Aa.
   
 0.651
sin3b
SIN3 transcription regulator family member B.
   
 0.651
LOC100694434
SIN3 transcription regulator family member Ab.
   
 0.651
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.650
ncor2
Nuclear receptor corepressor 2.
    
 0.641
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.641
ncor1
Nuclear receptor corepressor 1.
    
 0.641
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.