STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
colqCollagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase. (457 aa)    
Predicted Functional Partners:
MUSK
Muscle associated receptor tyrosine kinase.
    
 0.583
hacl1
2-hydroxyacyl-CoA lyase 1; Belongs to the TPP enzyme family.
 
      0.542
I3J4A1_ORENI
Myosin binding protein C, cardiac.
    
 0.522
LOC100704492
TNNI3 interacting kinase.
    
 0.509
LOC100699230
Myosin binding protein Hb.
    
 
 0.507
I3KY05_ORENI
Troponin T2c, cardiac.
   
  
 0.483
LOC100703358
Myosin XVIIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.481
LOC100711981
Distal-less homeobox 4b.
      
 0.480
tbx20
T-box transcription factor 20.
      
 0.473
rapsn
Receptor-associated protein of the synapse, 43kD.
      
 0.450
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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