Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slc39a13Solute carrier family 39 member 13. (368 aa)    
Predicted Functional Partners:
LOC100701202
Uncharacterized protein.
      
 0.923
slc39a9
Solute carrier family 39 member 9.
    
 0.914
ddx52
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
      
 0.907
LOC100708959
Uncharacterized protein.
    
 0.866
slc30a4
Solute carrier family 30 member 4.
   
 0.806
LOC100698478
Solute carrier family 39 member 14.
  
 
0.788
slc39a8
Solute carrier family 39 member 8.
  
 
0.788
slc30a6
Solute carrier family 30 member 6.
   
 0.780
slc30a5
Solute carrier family 30 member 5.
   
 0.780
slc30a7
Solute carrier family 30 member 7.
   
 0.761
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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