Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102077296Sema domain-containing protein. (708 aa)    
Predicted Functional Partners:
LOC100690065
Plexin C1.
    
 0.732
LOC100706295
Immunoglobulin superfamily, member 9Bb.
      
 0.710
igsf9b
Immunoglobulin superfamily member 9B.
      
 0.705
Fam185a
Family with sequence similarity 185 member A.
    
   0.658
I3KBB2_ORENI
Plexin A3.
    
 0.605
PLXND1
Plexin D1.
    
 0.605
PLXNA2
Plexin A2.
    
 0.605
LOC100710907
Plexin A2.
    
 0.605
plxna1
Plexin A1.
    
 0.605
plxna4
Plexin A4.
    
 0.605
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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