Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrc28Leucine rich repeat containing 28. (369 aa)    
Predicted Functional Partners:
supt3h
SPT3 homolog, SAGA and STAGA complex component.
    
 
 0.697
nyx
Nyctalopin.
  
 
 0.681
nsmaf
Neutral sphingomyelinase (N-SMase) activation associated factor.
      
 0.677
NSG1
Neuronal vesicle trafficking associated 1.
      
 0.675
LOC102076518
Kazrin, periplakin interacting protein b.
      
 0.622
KAZN
Kazrin, periplakin interacting protein a.
      
 0.622
ENSONIP00000051556
Uncharacterized protein LOC102079195.
      
 0.528
Gpank1
G patch domain and ankyrin repeat-containing protein 1.
      
 0.528
lrrc20
Leucine rich repeat containing 20.
  
     0.504
LOC100709513
E74-like factor 3 (ets domain transcription factor, epithelial-specific ).
      
 0.500
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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