Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lnx1Ligand of numb-protein X 1. (778 aa)    
Predicted Functional Partners:
suox
Sulfite oxidase.
     
  0.864
rps27a
Ribosomal protein S27a.
    
  0.776
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.746
numb
NUMB endocytic adaptor protein.
   
 
 0.744
LOC100693976
NUMB like endocytic adaptor protein.
   
 
 0.744
I3JMB1_ORENI
Angiomotin.
    
 0.713
ENSONIP00000047919
Ubiquitin B.
    
  0.701
exoc1l
Si:dkey-245p14.4.
    
 
 0.607
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
   
 0.594
LOC100693503
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
   
 0.594
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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