Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
scfd2Sec1 family domain containing 2; Belongs to the STXBP/unc-18/SEC1 family. (691 aa)    
Predicted Functional Partners:
stx18
Syntaxin 18.
    
 
 0.987
rint1
RAD50 interactor 1.
   
 
 0.987
nbas
Neuroblastoma amplified sequence.
   
 
 0.979
LOC100697254
BCL2 interacting protein 1b.
    
 
 0.970
zw10
Zw10 kinetochore protein.
    
 
 0.967
use1
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
   
   0.966
scfd1
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.952
napg
N-ethylmaleimide-sensitive factor attachment protein, gamma b.
    
   0.938
I3JK31_ORENI
Si:ch73-238c9.1.
    
 
 0.926
vamp4
Vesicle-associated membrane protein 4.
    
   0.910
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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