Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100696657Stathmin; Belongs to the stathmin family. (179 aa)    
Predicted Functional Partners:
vps26c
VPS26 endosomal protein sorting factor C.
    
 
 0.837
commd9
COMM domain containing 9.
    
  0.781
I3KE03_ORENI
COMM domain containing 4.
    
  0.775
dennd10
DENN domain containing 10.
   
  0.766
vps35l
VPS35 endosomal protein sorting factor like.
    
   0.762
ccdc93
Coiled-coil domain containing 93.
    
   0.756
COMMD10
COMM domain containing 10.
    
  0.746
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 
 0.738
gng3
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
   
  
 0.723
commd7
COMM domain containing 7.
    
  0.715
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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