Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
txnl4bThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)    
Predicted Functional Partners:
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
    
 0.968
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
 0.968
prpf8
Pre-mRNA processing factor 8.
    
 0.960
Snrpg
Small nuclear ribonucleoprotein G.
   
 0.960
I3KN33_ORENI
Zinc finger, matrin-type 2.
   
 0.957
ccdc84
Coiled-coil domain containing 84.
    
 
 0.952
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
    
 0.940
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
    
 0.940
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
  0.933
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 0.932
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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