Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100691480Si:dkey-12j5.1. (458 aa)    
Predicted Functional Partners:
rpl4
Ribosomal protein L4.
  
 
 0.895
grwd1
Glutamate-rich WD repeat containing 1.
   
  
 0.888
h6pd
Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).
   
 
 0.871
tpi
Triosephosphate isomerase.
  
 0.841
LOC100696029
Triosephosphate isomerase.
  
 0.841
mycbpap
Mycbp associated protein.
  
 0.836
pgk1
Phosphoglycerate kinase.
  
 0.836
LOC100711605
Malate synthase-like.
     
 0.828
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
  
 0.815
tsr2
TSR2 ribosome maturation factor.
   
  
 0.798
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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