Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
I3J4Y8_ORENISi:ch73-244f7.3. (206 aa)    
Predicted Functional Partners:
etfb
Electron transfer flavoprotein subunit beta.
    
 0.542
spata5l1
Spermatogenesis associated 5-like 1.
   
  0.489
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
  0.489
SPATA5
Spermatogenesis associated 5.
   
  0.489
LOC100702196
Zgc:136908; Belongs to the AAA ATPase family.
   
  0.489
med25
Mediator complex subunit 25.
      
 0.442
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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